{
  "_id": "6a10341bacfb0bcc41c98cf1",
  "Package": "SSNbayes",
  "Type": "Package",
  "Title": "Bayesian Spatio-Temporal Analysis in Stream Networks",
  "Version": "0.1.1",
  "Authors@R": "c(person(\"Edgar\", \"Santos-Fernandez\", role = c(\"aut\", \"cre\",\"cph\"),\nemail = \"santosfe@qut.edu.au\",\ncomment = c(ORCID = \"0000-0001-5962-5417\")) )",
  "Description": "Fits Bayesian spatio-temporal models and makes predictions\non stream networks using the approach by Santos-Fernandez,\nEdgar, et al. (2022).\"Bayesian spatio-temporal models for\nstream networks\" and Santos-Fernandez, Edgar, et al. (2023).\n\"SSNbayes: An R Package for Bayesian Spatio-Temporal Modelling\non Stream Networks\". In these models, spatial dependence is\ncaptured using stream distance and flow connectivity, while\ntemporal autocorrelation is modelled using vector\nautoregression methods.",
  "License": "GPL-2",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.2",
  "VignetteBuilder": "knitr",
  "URL": "https://github.com/EdgarSantos-Fernandez/SSNbayes",
  "BugReports": "https://github.com/EdgarSantos-Fernandez/SSNbayes/issues",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nlibglpk-dev make libicu-dev libpng-dev libuv1-dev libxml2-dev\nlibssl-dev libproj-dev python3 libsqlite3-dev libudunits2-dev",
  "Repository": "https://edgarsantos-fernandez.r-universe.dev",
  "Date/Publication": "2025-07-25 05:11:49 UTC",
  "RemoteUrl": "https://github.com/edgarsantos-fernandez/ssnbayes",
  "RemoteRef": "HEAD",
  "RemoteSha": "e02b8209c1371a272b2f8536ab6488254870b0f0",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-12 07:57:51 UTC",
    "User": "root"
  },
  "Author": "Edgar Santos-Fernandez [aut, cre, cph] (ORCID:\n<https://orcid.org/0000-0001-5962-5417>)",
  "Maintainer": "Edgar Santos-Fernandez <santosfe@qut.edu.au>",
  "MD5sum": "cca263fc198d3aa00c46966ec35e9f70",
  "_user": "edgarsantos-fernandez",
  "_type": "src",
  "_file": "SSNbayes_0.1.1.tar.gz",
  "_fileid": "17c651650dc4073dad906843de5a7d69aea3c03c0ccb6b3b383327f8912012a0",
  "_filesize": 9450955,
  "_sha256": "17c651650dc4073dad906843de5a7d69aea3c03c0ccb6b3b383327f8912012a0",
  "_created": "2026-05-12T07:57:51.000Z",
  "_published": "2026-05-22T10:46:51.782Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77364238511,
      "time": 460,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "6938831062"
    },
    {
      "job": 77364238583,
      "time": 294,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "6938779505"
    },
    {
      "job": 77364238480,
      "time": 340,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "6938783470"
    },
    {
      "job": 77364238362,
      "time": 198,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "6938745167"
    },
    {
      "job": 77364237875,
      "time": 264,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6938689789"
    },
    {
      "job": 77364237956,
      "time": 177,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7158665618"
    },
    {
      "job": 77364238327,
      "time": 377,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "6938805783"
    },
    {
      "job": 77364238350,
      "time": 268,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "6938771680"
    },
    {
      "job": 77364238594,
      "time": 235,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "6938761665"
    }
  ],
  "_buildurl": "https://github.com/r-universe/edgarsantos-fernandez/actions/runs/25721174123",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/edgarsantos-fernandez/ssnbayes",
  "_commit": {
    "id": "e02b8209c1371a272b2f8536ab6488254870b0f0",
    "author": "EdgarSantos-Fernandez <edgar.santosfdez@gmail.com>",
    "committer": "EdgarSantos-Fernandez <edgar.santosfdez@gmail.com>",
    "message": "deep learning and spat bayesian methods added\n",
    "time": 1753420309
  },
  "_maintainer": {
    "name": "Edgar Santos-Fernandez",
    "email": "santosfe@qut.edu.au",
    "orcid": "0000-0001-5962-5417"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.0.0",
      "role": "Depends"
    },
    {
      "package": "plyr",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "rstan",
      "role": "Imports"
    },
    {
      "package": "mtsdi",
      "role": "Imports"
    },
    {
      "package": "sf",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "SSN2",
      "role": "Imports"
    },
    {
      "package": "sfnetworks",
      "role": "Imports"
    },
    {
      "package": "igraph",
      "role": "Imports"
    },
    {
      "package": "geosphere",
      "role": "Imports"
    },
    {
      "package": "osmdata",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "keras",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "leaflet",
      "role": "Imports"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "edgarsantos-fernandez",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-30",
      "n": 1
    }
  ],
  "_tags": [],
  "_stars": 20,
  "_contributors": [
    {
      "user": "edgarsantos-fernandez",
      "count": 63,
      "uuid": 17773860
    },
    {
      "user": "sean-francis-github",
      "count": 2,
      "uuid": 156046223
    }
  ],
  "_userbio": {
    "uuid": 17773860,
    "type": "user",
    "name": "ed_sans"
  },
  "_downloads": {
    "count": 208,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SSNbayes"
  },
  "_devurl": "https://github.com/edgarsantos-fernandez/ssnbayes",
  "_searchresults": 6,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/SSNbayes.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/edgarsantos-fernandez/ssnbayes",
  "_realowner": "edgarsantos-fernandez",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.0.1",
      "date": "2021-10-22"
    },
    {
      "version": "0.0.2",
      "date": "2022-12-13"
    },
    {
      "version": "0.0.3",
      "date": "2023-12-03"
    }
  ],
  "_exports": [
    "barst",
    "collapse",
    "dist_weight_mat",
    "dist_weight_mat_preds",
    "generate_osm_ssn",
    "krig",
    "krig2",
    "mylm",
    "pred_ssnbayes",
    "ssnbayes",
    "ssnbayes2",
    "starn"
  ],
  "_help": [
    {
      "page": "barst",
      "title": "Bayesian Autoregressive Spatio-Temporal model (BARST)",
      "topics": [
        "barst"
      ]
    },
    {
      "page": "collapse",
      "title": "Collapses a SpatialStreamNetwork object into a data frame",
      "topics": [
        "collapse"
      ]
    },
    {
      "page": "convert_network_to_graph",
      "title": "Combines two `sf` objects, the sensor locations and river network, in to an `sfnetwork`.",
      "topics": [
        "convert_network_to_graph"
      ]
    },
    {
      "page": "dist_weight_mat",
      "title": "Creates a list containing the stream distances and weights",
      "topics": [
        "dist_weight_mat"
      ]
    },
    {
      "page": "dist_weight_mat_preds",
      "title": "Creates a list of distances and weights between observed and prediction sites",
      "topics": [
        "dist_weight_mat_preds"
      ]
    },
    {
      "page": "format_sensor_data",
      "title": "Converts a dataframe containing sensor data in to an `sf` object",
      "topics": [
        "format_sensor_data"
      ]
    },
    {
      "page": "gen_distance_matrices",
      "title": "Creates a list containing the stream distances and weights",
      "topics": [
        "gen_distance_matrices"
      ]
    },
    {
      "page": "generate_osm_ssn",
      "title": "Generates an Open Street Maps Spatial Stream Network.",
      "topics": [
        "generate_osm_ssn"
      ]
    },
    {
      "page": "generate_prediction_locations",
      "title": "Creates an `sf` dataframe containing equally spaced points on a river network",
      "topics": [
        "generate_prediction_locations"
      ]
    },
    {
      "page": "generate_river_network",
      "title": "Takes an `sf` object as input, and queries Open Street Maps for rivers and streams within the bounds of the sensor locations.",
      "topics": [
        "generate_river_network"
      ]
    },
    {
      "page": "krig",
      "title": "Internal function used to perform spatio-temporal prediction in R using a stanfit object from ssnbayes()",
      "topics": [
        "krig"
      ]
    },
    {
      "page": "krig2",
      "title": "Internal function used to perform spatio-temporal prediction in R using a stanfit object from ssnbayes()",
      "topics": [
        "krig2"
      ]
    },
    {
      "page": "mylm",
      "title": "A simple modeling function using a formula and data",
      "topics": [
        "mylm"
      ]
    },
    {
      "page": "pred_ssnbayes",
      "title": "Internal function used to perform spatio-temporal prediction in R using a stanfit object from ssnbayes()",
      "topics": [
        "pred_ssnbayes"
      ]
    },
    {
      "page": "predict.ssnbayes",
      "title": "Performs spatio-temporal prediction in R using an ssnbayes object from a fitted model.",
      "topics": [
        "predict.ssnbayes"
      ]
    },
    {
      "page": "predict.ssnbayes2",
      "title": "Performs spatio-temporal prediction in R using an ssnbayes object from a fitted model.",
      "topics": [
        "predict.ssnbayes2"
      ]
    },
    {
      "page": "ssnbayes",
      "title": "Fits a mixed linear regression model using Stan",
      "topics": [
        "ssnbayes"
      ]
    },
    {
      "page": "ssnbayes2",
      "title": "Fits a mixed linear regression model using Stan. This is an updated version of ssnbayes()",
      "topics": [
        "ssnbayes2"
      ]
    },
    {
      "page": "starn",
      "title": "Spatio-Temporal Attention Regression Network (STARN)",
      "topics": [
        "starn"
      ]
    }
  ],
  "_readme": "https://github.com/edgarsantos-fernandez/ssnbayes/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "askpass",
    "backports",
    "base64enc",
    "BH",
    "bit",
    "bit64",
    "blob",
    "bslib",
    "cachem",
    "callr",
    "checkmate",
    "class",
    "classInt",
    "cli",
    "codetools",
    "config",
    "cpp11",
    "crayon",
    "crosstalk",
    "curl",
    "DBI",
    "desc",
    "digest",
    "distributional",
    "doParallel",
    "dplyr",
    "e1071",
    "evaluate",
    "farver",
    "fastmap",
    "filematrix",
    "fontawesome",
    "foreach",
    "fs",
    "gam",
    "generics",
    "geometries",
    "geosphere",
    "ggplot2",
    "glue",
    "gridExtra",
    "gtable",
    "here",
    "highr",
    "htmltools",
    "htmlwidgets",
    "httr",
    "httr2",
    "igraph",
    "inline",
    "isoband",
    "iterators",
    "itertools",
    "jquerylib",
    "jsonlite",
    "keras",
    "KernSmooth",
    "knitr",
    "labeling",
    "lattice",
    "lazyeval",
    "leaflet",
    "leaflet.providers",
    "lifecycle",
    "loo",
    "lwgeom",
    "magrittr",
    "MASS",
    "Matrix",
    "matrixStats",
    "memoise",
    "mime",
    "mtsdi",
    "numDeriv",
    "openssl",
    "osmdata",
    "pillar",
    "pkgbuild",
    "pkgconfig",
    "plyr",
    "png",
    "posterior",
    "processx",
    "proxy",
    "ps",
    "purrr",
    "QuickJSR",
    "R6",
    "rappdirs",
    "raster",
    "RColorBrewer",
    "Rcpp",
    "RcppEigen",
    "RcppParallel",
    "RcppTOML",
    "reticulate",
    "rlang",
    "rmarkdown",
    "rprojroot",
    "RSQLite",
    "rstan",
    "rstudioapi",
    "rvest",
    "s2",
    "S7",
    "sass",
    "scales",
    "selectr",
    "sf",
    "sfheaders",
    "sfnetworks",
    "sp",
    "spmodel",
    "SSN2",
    "StanHeaders",
    "stringi",
    "stringr",
    "sys",
    "tensorA",
    "tensorflow",
    "terra",
    "tfautograph",
    "tfruns",
    "tibble",
    "tidygraph",
    "tidyr",
    "tidyselect",
    "tinytex",
    "units",
    "utf8",
    "vctrs",
    "viridisLite",
    "whisker",
    "withr",
    "wk",
    "xfun",
    "xml2",
    "yaml",
    "zeallot"
  ],
  "_vignettes": [
    {
      "source": "SSNbayes.Rmd",
      "filename": "SSNbayes.html",
      "title": "SSNbayes",
      "engine": "knitr::rmarkdown",
      "headings": [],
      "created": "2021-10-12 02:19:31",
      "modified": "2021-10-12 02:19:31",
      "commits": 1
    }
  ],
  "_score": 5,
  "_indexed": true,
  "_nocasepkg": "ssnbayes",
  "_universes": [
    "edgarsantos-fernandez"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-05-12T08:04:01.000Z",
      "distro": "noble",
      "commit": "e02b8209c1371a272b2f8536ab6488254870b0f0",
      "fileid": "5cec6ca8dcc1745e92dbc3307c62dfdd4502cb055faa42ea23963f4a73fc5e22",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/edgarsantos-fernandez/actions/runs/25721174123"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-05-12T08:01:20.000Z",
      "distro": "noble",
      "commit": "e02b8209c1371a272b2f8536ab6488254870b0f0",
      "fileid": "9f95c2818606d6ac9c8bb8b0a17395490ff2bd29b8686241201757d8fff6a2f6",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/edgarsantos-fernandez/actions/runs/25721174123"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-05-12T08:01:34.000Z",
      "commit": "e02b8209c1371a272b2f8536ab6488254870b0f0",
      "fileid": "6780a98a00d6ad18ba41d57d5fa717c3dd30aa12a0db9cd99ed3a4329b16af66",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/edgarsantos-fernandez/actions/runs/25721174123"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-05-12T08:00:05.000Z",
      "commit": "e02b8209c1371a272b2f8536ab6488254870b0f0",
      "fileid": "0d89fcc469e14e079747f6d21e9d3818c9e8c8559f9eddd26106addf002fa654",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/edgarsantos-fernandez/actions/runs/25721174123"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-05-12T08:02:14.000Z",
      "commit": "e02b8209c1371a272b2f8536ab6488254870b0f0",
      "fileid": "9ea5fbd652cd8b44317df19836fb0381b76f47b8824f6d02f5d527fae5ef2600",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/edgarsantos-fernandez/actions/runs/25721174123"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-05-12T08:00:26.000Z",
      "commit": "e02b8209c1371a272b2f8536ab6488254870b0f0",
      "fileid": "4d3857106b43da728e946444d02ec798d4497abdf4489f83cfb507848724cf94",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/edgarsantos-fernandez/actions/runs/25721174123"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-05-12T07:59:50.000Z",
      "commit": "e02b8209c1371a272b2f8536ab6488254870b0f0",
      "fileid": "4b3c0c2981d338019e9831abe3a099b10a1466b52ce4dd27ea7fde36d0e204c4",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/edgarsantos-fernandez/actions/runs/25721174123"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.1",
      "date": "2026-05-22T10:46:30.000Z",
      "commit": "e02b8209c1371a272b2f8536ab6488254870b0f0",
      "fileid": "e07d6fcdd232b3ea967a3a999a08e6c368796b1c7222b3e864df5cc3edfa5d36",
      "status": "success",
      "buildurl": "https://github.com/r-universe/edgarsantos-fernandez/actions/runs/25721174123"
    }
  ]
}